IL_6ZQD_021
3D structure
- PDB id
- 6ZQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 6ZQD|1|D3|U|313, 6ZQD|1|D3|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQD_021 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1728
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6ZQD|1|D3|U|311
6ZQD|1|D3|A|312
6ZQD|1|D3|U|313
6ZQD|1|D3|C|314
6ZQD|1|D3|A|315
6ZQD|1|D3|A|316
*
6ZQD|1|D3|U|348
6ZQD|1|D3|U|349
6ZQD|1|D3|U|350
6ZQD|1|D3|C|351
6ZQD|1|D3|A|352
6ZQD|1|D3|A|353
6ZQD|1|D3|C|354
6ZQD|1|D3|G|355
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DI
- 40S ribosomal protein S8-A
- Chain DL
- 40S ribosomal protein S11-A
- Chain DX
- 40S ribosomal protein S23-A
- Chain JD
- Probable ATP-dependent RNA helicase DHR1
Coloring options: