IL_6ZQD_032

3D structure

PDB id

6ZQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CAGC

Length

6 nucleotides

Bulged bases

6ZQD|1|D3|A|585, 6ZQD|1|D3|G|586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQD_032 not in the Motif Atlas

Geometric match to IL_3IGI_013

Geometric discrepancy: 0.2297

The information below is about IL_3IGI_013

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

6ZQD|1|D3|G|551
6ZQD|1|D3|G|552
*
6ZQD|1|D3|C|584
6ZQD|1|D3|A|585
6ZQD|1|D3|G|586
6ZQD|1|D3|C|587

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain DX

40S ribosomal protein S23-A

Chain UC

Something about silencing protein 10

Chain UK

U3 small nucleolar RNA-associated protein 11