IL_6ZQD_048

3D structure

PDB id

6ZQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

6ZQD|1|D3|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQD_048 not in the Motif Atlas

Homologous match to IL_4V88_431

Geometric discrepancy: 0.1169

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6ZQD|1|D3|C|874
6ZQD|1|D3|G|875
6ZQD|1|D3|G|876
6ZQD|1|D3|G|877
6ZQD|1|D3|G|878
*
6ZQD|1|D3|C|950
6ZQD|1|D3|A|951
6ZQD|1|D3|A|952
6ZQD|1|D3|G|953

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DA

40S ribosomal protein S1-A

Chain DN

40S ribosomal protein S13