IL_6ZQE_014

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UAUAAC*GCUAAUA

Length

13 nucleotides

Bulged bases

6ZQE|1|D3|U|170

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQE_014 not in the Motif Atlas

Geometric match to IL_4LFB_009

Geometric discrepancy: 0.2543

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6ZQE|1|D3|U|144
6ZQE|1|D3|A|145
6ZQE|1|D3|U|146
6ZQE|1|D3|A|147
6ZQE|1|D3|A|148
6ZQE|1|D3|C|149
*
6ZQE|1|D3|G|165
6ZQE|1|D3|C|166
6ZQE|1|D3|U|167
6ZQE|1|D3|A|168
6ZQE|1|D3|A|169
6ZQE|1|D3|U|170
6ZQE|1|D3|A|171

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DG

40S ribosomal protein S6-A

Chain DY

40S ribosomal protein S24-A