IL_6ZQE_024

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6ZQE|1|D3|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQE_024 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1797

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6ZQE|1|D3|G|363
6ZQE|1|D3|G|364
6ZQE|1|D3|G|365
*
6ZQE|1|D3|C|376
6ZQE|1|D3|G|377
6ZQE|1|D3|A|378
6ZQE|1|D3|U|379
6ZQE|1|D3|U|380
6ZQE|1|D3|C|381

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain DE

40S ribosomal protein S4-A

Chain DJ

40S ribosomal protein S9-A