IL_6ZQE_046
3D structure
- PDB id
- 6ZQE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.1 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 6ZQE|1|D3|U|794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQE_046 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.3498
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6ZQE|1|D3|G|751
6ZQE|1|D3|A|752
6ZQE|1|D3|A|753
6ZQE|1|D3|A|754
6ZQE|1|D3|A|755
6ZQE|1|D3|A|756
6ZQE|1|D3|A|757
6ZQE|1|D3|U|758
6ZQE|1|D3|U|759
*
6ZQE|1|D3|A|791
6ZQE|1|D3|U|792
6ZQE|1|D3|A|793
6ZQE|1|D3|U|794
6ZQE|1|D3|U|795
6ZQE|1|D3|A|796
6ZQE|1|D3|G|797
6ZQE|1|D3|C|798
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DE
- 40S ribosomal protein S4-A
- Chain DJ
- 40S ribosomal protein S9-A
- Chain DL
- 40S ribosomal protein S11-A
Coloring options: