IL_6ZQE_069

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQE_069 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.2807

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6ZQE|1|D3|U|1669
6ZQE|1|D3|G|1670
6ZQE|1|D3|A|1671
6ZQE|1|D3|G|1672
*
6ZQE|1|D3|C|1729
6ZQE|1|D3|A|1730
6ZQE|1|D3|A|1731
6ZQE|1|D3|A|1732

Current chains

Chain D3

18S rRNA

Nearby chains