IL_6ZQF_009

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6ZQF|1|D3|U|170

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQF_009 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.0967

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6ZQF|1|D3|G|143
6ZQF|1|D3|U|144
6ZQF|1|D3|A|145
6ZQF|1|D3|U|146
6ZQF|1|D3|A|147
6ZQF|1|D3|A|148
6ZQF|1|D3|C|149
*
6ZQF|1|D3|G|165
6ZQF|1|D3|C|166
6ZQF|1|D3|U|167
6ZQF|1|D3|A|168
6ZQF|1|D3|A|169
6ZQF|1|D3|U|170
6ZQF|1|D3|A|171
6ZQF|1|D3|C|172

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DG

40S ribosomal protein S6-A

Chain DY

40S ribosomal protein S24-A