IL_6ZQF_019
3D structure
- PDB id
- 6ZQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- GGG*CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 6ZQF|1|D3|U|380
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQF_019 not in the Motif Atlas
- Homologous match to IL_4V88_404
- Geometric discrepancy: 0.0569
- The information below is about IL_4V88_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11347.3
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6ZQF|1|D3|G|363
6ZQF|1|D3|G|364
6ZQF|1|D3|G|365
*
6ZQF|1|D3|C|376
6ZQF|1|D3|G|377
6ZQF|1|D3|A|378
6ZQF|1|D3|U|379
6ZQF|1|D3|U|380
6ZQF|1|D3|C|381
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DE
- 40S ribosomal protein S4-A
- Chain DJ
- 40S ribosomal protein S9-A
- Chain DX
- 40S ribosomal protein S23-A
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