IL_6ZQF_027

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GG*CAGC

Length

6 nucleotides

Bulged bases

6ZQF|1|D3|A|585, 6ZQF|1|D3|G|586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQF_027 not in the Motif Atlas

Geometric match to IL_7A0S_090

Geometric discrepancy: 0.396

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6ZQF|1|D3|G|551
6ZQF|1|D3|G|552
*
6ZQF|1|D3|C|584
6ZQF|1|D3|A|585
6ZQF|1|D3|G|586
6ZQF|1|D3|C|587

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DX

40S ribosomal protein S23-A

Chain UC

Something about silencing protein 10