IL_6ZQF_047

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CGA*UCUUUGG

Length

10 nucleotides

Bulged bases

6ZQF|1|D3|C|1096, 6ZQF|1|D3|U|1097, 6ZQF|1|D3|U|1098, 6ZQF|1|D3|U|1099, 6ZQF|1|D3|G|1100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQF_047 not in the Motif Atlas

Homologous match to IL_4V88_437

Geometric discrepancy: 0.5366

The information below is about IL_4V88_437

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62898.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6ZQF|1|D3|C|1034
6ZQF|1|D3|G|1035
6ZQF|1|D3|A|1036
*
6ZQF|1|D3|U|1095
6ZQF|1|D3|C|1096
6ZQF|1|D3|U|1097
6ZQF|1|D3|U|1098
6ZQF|1|D3|U|1099
6ZQF|1|D3|G|1100
6ZQF|1|D3|G|1101

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DN

40S ribosomal protein S13

Chain DW

40S ribosomal protein S22-A

Chain DX

40S ribosomal protein S23-A