IL_6ZQF_061

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6ZQF|1|D3|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQF_061 not in the Motif Atlas

Homologous match to IL_8P9A_422

Geometric discrepancy: 0.3647

The information below is about IL_8P9A_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57741.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6ZQF|1|D3|U|893
6ZQF|1|D3|U|894
6ZQF|1|D3|G|895
6ZQF|1|D3|U|896
6ZQF|1|D3|C|897
6ZQF|1|D3|A|898
6ZQF|1|D3|G|899
*
6ZQF|1|D3|C|910
6ZQF|1|D3|U|911
6ZQF|1|D3|U|912
6ZQF|1|D3|G|913
6ZQF|1|D3|G|914
6ZQF|1|D3|A|915
6ZQF|1|D3|U|916
6ZQF|1|D3|U|917
6ZQF|1|D3|U|918
6ZQF|1|D3|A|919

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DA

40S ribosomal protein S1-A

Chain DO

40S ribosomal protein S14-A

Chain UM

U3 small nucleolar RNA-associated protein 13