IL_6ZQG_043

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACGUUU*AUCGU

Length

11 nucleotides

Bulged bases

6ZQG|1|D3|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQG_043 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3862

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6ZQG|1|D3|A|817
6ZQG|1|D3|C|818
6ZQG|1|D3|G|819
6ZQG|1|D3|U|820
6ZQG|1|D3|U|821
6ZQG|1|D3|U|822
*
6ZQG|1|D3|A|850
6ZQG|1|D3|U|851
6ZQG|1|D3|C|852
6ZQG|1|D3|G|853
6ZQG|1|D3|U|854

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DH

40S ribosomal protein S7-A