IL_6ZQG_071

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACCAC*GUCCCU

Length

11 nucleotides

Bulged bases

6ZQG|1|D3|C|1158, 6ZQG|1|D3|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQG_071 not in the Motif Atlas

Geometric match to IL_5TBW_062

Geometric discrepancy: 0.3515

The information below is about IL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51005.1

Basepair signature

cWW-L-R-tWH-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6ZQG|1|D3|A|1157
6ZQG|1|D3|C|1158
6ZQG|1|D3|C|1159
6ZQG|1|D3|A|1160
6ZQG|1|D3|C|1161
*
6ZQG|1|D3|G|1616
6ZQG|1|D3|U|1617
6ZQG|1|D3|C|1618
6ZQG|1|D3|C|1619
6ZQG|1|D3|C|1620
6ZQG|1|D3|U|1621

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CJ

U3 small nucleolar ribonucleoprotein protein IMP4

Chain DF

Rps5p

Chain Dc

40S ribosomal protein S28-A