IL_6ZSB_015

3D structure

PDB id

6ZSB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

6ZSB|1|AA|C|904, 6ZSB|1|AA|C|906

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSB_015 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2104

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6ZSB|1|AA|G|887
6ZSB|1|AA|U|888
6ZSB|1|AA|G|889
6ZSB|1|AA|C|890
6ZSB|1|AA|C|891
6ZSB|1|AA|A|892
6ZSB|1|AA|G|893
*
6ZSB|1|AA|C|900
6ZSB|1|AA|G|901
6ZSB|1|AA|G|902
6ZSB|1|AA|U|903
6ZSB|1|AA|C|904
6ZSB|1|AA|A|905
6ZSB|1|AA|C|906
6ZSB|1|AA|A|907
6ZSB|1|AA|C|908

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial