IL_6ZSC_015

3D structure

PDB id

6ZSC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

6ZSC|1|AA|C|904, 6ZSC|1|AA|C|906

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSC_015 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2028

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6ZSC|1|AA|G|887
6ZSC|1|AA|U|888
6ZSC|1|AA|G|889
6ZSC|1|AA|C|890
6ZSC|1|AA|C|891
6ZSC|1|AA|A|892
6ZSC|1|AA|G|893
*
6ZSC|1|AA|C|900
6ZSC|1|AA|G|901
6ZSC|1|AA|G|902
6ZSC|1|AA|U|903
6ZSC|1|AA|C|904
6ZSC|1|AA|A|905
6ZSC|1|AA|C|906
6ZSC|1|AA|A|907
6ZSC|1|AA|C|908

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial