IL_6ZSC_098

3D structure

PDB id

6ZSC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCUGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSC_098 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.2181

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6ZSC|1|XA|C|3119
6ZSC|1|XA|C|3120
6ZSC|1|XA|C|3121
6ZSC|1|XA|U|3122
6ZSC|1|XA|G|3123
6ZSC|1|XA|U|3124
6ZSC|1|XA|A|3125
6ZSC|1|XA|C|3126
*
6ZSC|1|XA|G|3131
6ZSC|1|XA|G|3132
6ZSC|1|XA|A|3133
6ZSC|1|XA|C|3134
6ZSC|1|XA|A|3135
6ZSC|1|XA|A|3136
6ZSC|1|XA|G|3137

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

39S ribosomal protein L14, mitochondrial