IL_6ZSD_097

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCCUGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSD_097 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.2299

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6ZSD|1|XA|C|3119
6ZSD|1|XA|C|3120
6ZSD|1|XA|C|3121
6ZSD|1|XA|U|3122
6ZSD|1|XA|G|3123
6ZSD|1|XA|U|3124
6ZSD|1|XA|A|3125
6ZSD|1|XA|C|3126
*
6ZSD|1|XA|G|3131
6ZSD|1|XA|G|3132
6ZSD|1|XA|A|3133
6ZSD|1|XA|C|3134
6ZSD|1|XA|A|3135
6ZSD|1|XA|A|3136
6ZSD|1|XA|G|3137

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

39S ribosomal protein L14, mitochondrial