IL_6ZSD_098

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUAC*GCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSD_098 not in the Motif Atlas

Geometric match to IL_8CRE_066

Geometric discrepancy: 0.2782

The information below is about IL_8CRE_066

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6ZSD|1|XA|C|3148
6ZSD|1|XA|C|3149
6ZSD|1|XA|U|3150
6ZSD|1|XA|A|3151
6ZSD|1|XA|C|3152
*
6ZSD|1|XA|G|3161
6ZSD|1|XA|C|3162
6ZSD|1|XA|G|3163

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XE

39S ribosomal protein L3, mitochondrial

Chain XL

39S ribosomal protein L14, mitochondrial

Chain XQ

39S ribosomal protein L19, mitochondrial