IL_6ZSG_015

3D structure

PDB id

6ZSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

6ZSG|1|AA|C|904, 6ZSG|1|AA|C|906, 6ZSG|1|AA|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSG_015 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2021

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6ZSG|1|AA|G|887
6ZSG|1|AA|U|888
6ZSG|1|AA|G|889
6ZSG|1|AA|C|890
6ZSG|1|AA|C|891
6ZSG|1|AA|A|892
6ZSG|1|AA|G|893
*
6ZSG|1|AA|C|900
6ZSG|1|AA|G|901
6ZSG|1|AA|G|902
6ZSG|1|AA|U|903
6ZSG|1|AA|C|904
6ZSG|1|AA|A|905
6ZSG|1|AA|C|906
6ZSG|1|AA|A|907
6ZSG|1|AA|C|908

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial