IL_6ZTJ_035

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

6ZTJ|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTJ_035 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0847

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6ZTJ|1|AA|U|684
6ZTJ|1|AA|G|685
6ZTJ|1|AA|U|686
6ZTJ|1|AA|A|687
6ZTJ|1|AA|G|688
*
6ZTJ|1|AA|C|699
6ZTJ|1|AA|G|700
6ZTJ|1|AA|U|701
6ZTJ|1|AA|A|702
6ZTJ|1|AA|G|703
6ZTJ|1|AA|A|704
6ZTJ|1|AA|G|705
6ZTJ|1|AA|A|706

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA