IL_6ZTJ_134

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6ZTJ|1|BA|A|1801, 6ZTJ|1|BA|C|1816, 6ZTJ|1|BA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTJ_134 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0678

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6ZTJ|1|BA|U|1798
6ZTJ|1|BA|G|1799
6ZTJ|1|BA|C|1800
6ZTJ|1|BA|A|1801
6ZTJ|1|BA|A|1802
6ZTJ|1|BA|A|1803
6ZTJ|1|BA|C|1804
*
6ZTJ|1|BA|G|1813
6ZTJ|1|BA|G|1814
6ZTJ|1|BA|A|1815
6ZTJ|1|BA|C|1816
6ZTJ|1|BA|G|1817
6ZTJ|1|BA|U|1818
6ZTJ|1|BA|A|1819
6ZTJ|1|BA|U|1820
6ZTJ|1|BA|A|1821

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2