IL_6ZTL_134

3D structure

PDB id

6ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state bound to NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6ZTL|1|BA|A|1801, 6ZTL|1|BA|C|1816, 6ZTL|1|BA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTL_134 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0903

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6ZTL|1|BA|U|1798
6ZTL|1|BA|G|1799
6ZTL|1|BA|C|1800
6ZTL|1|BA|A|1801
6ZTL|1|BA|A|1802
6ZTL|1|BA|A|1803
6ZTL|1|BA|C|1804
*
6ZTL|1|BA|G|1813
6ZTL|1|BA|G|1814
6ZTL|1|BA|A|1815
6ZTL|1|BA|C|1816
6ZTL|1|BA|G|1817
6ZTL|1|BA|U|1818
6ZTL|1|BA|A|1819
6ZTL|1|BA|U|1820
6ZTL|1|BA|A|1821

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2