IL_6ZTL_140

3D structure

PDB id

6ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state bound to NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

6ZTL|1|BA|A|1938, 6ZTL|1|BA|U|1944, 6ZTL|1|BA|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTL_140 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1388

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

6ZTL|1|BA|C|1934
6ZTL|1|BA|G|1935
6ZTL|1|BA|A|1936
6ZTL|1|BA|A|1937
6ZTL|1|BA|A|1938
6ZTL|1|BA|5MU|1939
6ZTL|1|BA|U|1940
6ZTL|1|BA|C|1941
6ZTL|1|BA|C|1942
6ZTL|1|BA|U|1943
6ZTL|1|BA|U|1944
6ZTL|1|BA|G|1945
*
6ZTL|1|BA|C|1961
6ZTL|1|BA|5MC|1962
6ZTL|1|BA|U|1963
6ZTL|1|BA|G|1964

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AX

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L2