IL_6ZTL_170

3D structure

PDB id

6ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state bound to NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

6ZTL|1|BA|U|2689, 6ZTL|1|BA|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTL_170 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.1077

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6ZTL|1|BA|U|2687
6ZTL|1|BA|G|2688
6ZTL|1|BA|U|2689
6ZTL|1|BA|U|2690
6ZTL|1|BA|C|2691
*
6ZTL|1|BA|G|2718
6ZTL|1|BA|G|2719
6ZTL|1|BA|U|2720
6ZTL|1|BA|A|2721
6ZTL|1|BA|G|2722

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BO

50S ribosomal protein L17

Chain BQ

50S ribosomal protein L19