IL_6ZTM_035

3D structure

PDB id

6ZTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state without NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

6ZTM|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTM_035 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0975

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6ZTM|1|AA|U|684
6ZTM|1|AA|G|685
6ZTM|1|AA|U|686
6ZTM|1|AA|A|687
6ZTM|1|AA|G|688
*
6ZTM|1|AA|C|699
6ZTM|1|AA|G|700
6ZTM|1|AA|U|701
6ZTM|1|AA|A|702
6ZTM|1|AA|G|703
6ZTM|1|AA|A|704
6ZTM|1|AA|G|705
6ZTM|1|AA|A|706

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA