IL_6ZTN_025
3D structure
- PDB id
- 6ZTN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6ZTN|1|AA|A|532, 6ZTN|1|AA|U|534, 6ZTN|1|AA|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZTN_025 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2446
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZTN|1|AA|G|515
6ZTN|1|AA|PSU|516
6ZTN|1|AA|G|517
6ZTN|1|AA|C|518
6ZTN|1|AA|C|519
6ZTN|1|AA|A|520
6ZTN|1|AA|G|521
*
6ZTN|1|AA|C|528
6ZTN|1|AA|G|529
6ZTN|1|AA|G|530
6ZTN|1|AA|U|531
6ZTN|1|AA|A|532
6ZTN|1|AA|A|533
6ZTN|1|AA|U|534
6ZTN|1|AA|A|535
6ZTN|1|AA|C|536
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- 30S ribosomal protein S3
- Chain AD
- 30S ribosomal protein S4
- Chain AL
- 30S ribosomal protein S12
- Chain AV
- mRNA
- Chain AX
- Transfer RNA; tRNA
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