3D structure

PDB id
6ZTN (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
6ZTN|1|AA|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZTN_030 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.0731
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

6ZTN|1|AA|U|605
6ZTN|1|AA|G|606
6ZTN|1|AA|A|607
6ZTN|1|AA|A|608
6ZTN|1|AA|A|609
6ZTN|1|AA|U|610
6ZTN|1|AA|C|611
6ZTN|1|AA|C|612
*
6ZTN|1|AA|G|628
6ZTN|1|AA|A|629
6ZTN|1|AA|A|630
6ZTN|1|AA|C|631
6ZTN|1|AA|U|632
6ZTN|1|AA|G|633

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AD
30S ribosomal protein S4
Chain AH
30S ribosomal protein S8
Chain AP
30S ribosomal protein S16
Chain AQ
30S ribosomal protein S17

Coloring options:


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