IL_6ZU5_003

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCG*CGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_003 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.2555

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6ZU5|1|L50|G|32
6ZU5|1|L50|C|33
6ZU5|1|L50|G|34
*
6ZU5|1|L50|C|367
6ZU5|1|L50|G|368
6ZU5|1|L50|C|369
6ZU5|1|L50|C|370

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LHH

uL29

Chain LJJ

eL37

Chain LL0

eL13

Chain LN0

eL15

Chain LY0

uL24