IL_6ZU5_016

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_016 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1124

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6ZU5|1|L50|C|594
6ZU5|1|L50|C|595
6ZU5|1|L50|G|596
*
6ZU5|1|L50|C|605
6ZU5|1|L50|A|606
6ZU5|1|L50|G|607

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LPP

eL43

Chain LR0

eL19

Chain S60

Small subunit ribosomal RNA; SSU rRNA

Chain SL0

uS17