IL_6ZU5_027

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGG*CACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_027 not in the Motif Atlas

Geometric match to IL_5LQO_002

Geometric discrepancy: 0.2238

The information below is about IL_5LQO_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

6ZU5|1|L50|G|759
6ZU5|1|L50|C|760
6ZU5|1|L50|G|761
6ZU5|1|L50|G|762
*
6ZU5|1|L50|C|781
6ZU5|1|L50|A|782
6ZU5|1|L50|C|783
6ZU5|1|L50|C|784

Current chains

Chain L50

25S rRNA

Nearby chains

Chain L70

5S ribosomal RNA; 5S rRNA

Chain LD0

uL18

Chain LI0

uL16

Chain LNN

Lso2