IL_6ZU5_041

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_041 not in the Motif Atlas

Geometric match to IL_4V9F_050

Geometric discrepancy: 0.1008

The information below is about IL_4V9F_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

6ZU5|1|L50|G|1194
6ZU5|1|L50|G|1195
6ZU5|1|L50|U|1196
6ZU5|1|L50|U|1197
*
6ZU5|1|L50|A|1476
6ZU5|1|L50|C|1477

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LGG

eL34

Chain LJJ

eL37

Chain LLL

eL39

Chain LX0

uL23