IL_6ZU5_047

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_047 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.2588

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6ZU5|1|L50|G|1328
6ZU5|1|L50|G|1329
6ZU5|1|L50|G|1330
6ZU5|1|L50|C|1331
*
6ZU5|1|L50|G|1431
6ZU5|1|L50|G|1432
6ZU5|1|L50|A|1433
6ZU5|1|L50|C|1434

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LGG

eL34

Chain LR0

eL19