IL_6ZU5_062

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAACGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6ZU5|1|L50|A|1750, 6ZU5|1|L50|C|1756, 6ZU5|1|L50|C|1775

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_062 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.0722

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6ZU5|1|L50|C|1746
6ZU5|1|L50|C|1747
6ZU5|1|L50|A|1748
6ZU5|1|L50|A|1749
6ZU5|1|L50|A|1750
6ZU5|1|L50|C|1751
6ZU5|1|L50|G|1752
6ZU5|1|L50|C|1753
6ZU5|1|L50|C|1754
6ZU5|1|L50|U|1755
6ZU5|1|L50|C|1756
6ZU5|1|L50|G|1757
*
6ZU5|1|L50|C|1773
6ZU5|1|L50|G|1774
6ZU5|1|L50|C|1775
6ZU5|1|L50|G|1776

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LA0

uL2

Chain S60

Small subunit ribosomal RNA; SSU rRNA