IL_6ZU5_085

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAGUAC*GGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_085 not in the Motif Atlas

Geometric match to IL_4V9F_092

Geometric discrepancy: 0.0802

The information below is about IL_4V9F_092

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6ZU5|1|L50|C|2408
6ZU5|1|L50|U|2409
6ZU5|1|L50|A|2410
6ZU5|1|L50|G|2411
6ZU5|1|L50|U|2412
6ZU5|1|L50|A|2413
6ZU5|1|L50|C|2414
*
6ZU5|1|L50|G|2419
6ZU5|1|L50|G|2420
6ZU5|1|L50|A|2421
6ZU5|1|L50|A|2422
6ZU5|1|L50|C|2423
6ZU5|1|L50|G|2424

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LH0

uL6

Chain LMM

eL40

Chain LV0

uL14