IL_6ZU5_088

3D structure

PDB id

6ZU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Paranosema locustae ribosome in complex with Lso2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGUAC*GGAGCC

Length

12 nucleotides

Bulged bases

6ZU5|1|L50|G|2515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU5_088 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.263

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6ZU5|1|L50|G|2487
6ZU5|1|L50|U|2488
6ZU5|1|L50|G|2489
6ZU5|1|L50|U|2490
6ZU5|1|L50|A|2491
6ZU5|1|L50|C|2492
*
6ZU5|1|L50|G|2512
6ZU5|1|L50|G|2513
6ZU5|1|L50|A|2514
6ZU5|1|L50|G|2515
6ZU5|1|L50|C|2516
6ZU5|1|L50|C|2517

Current chains

Chain L50

25S rRNA

Nearby chains

Chain LH0

uL6

Chain LMM

eL40

Chain LO0

uL13