IL_6ZU9_003

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

6ZU9|1|2|A|468

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU9_003 not in the Motif Atlas

Geometric match to IL_4V88_386

Geometric discrepancy: 0.1601

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6ZU9|1|2|U|37
6ZU9|1|2|C|38
6ZU9|1|2|A|39
6ZU9|1|2|A|40
6ZU9|1|2|A|41
*
6ZU9|1|2|U|466
6ZU9|1|2|G|467
6ZU9|1|2|A|468
6ZU9|1|2|C|469
6ZU9|1|2|A|470
6ZU9|1|2|A|471

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain W

40S ribosomal protein S9-A

Chain k

Translation initiation factor RLI1