3D structure

PDB id
6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast ABCE1-bound 48S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
6.2 Å

Loop

Sequence
GUUA*UUUC
Length
8 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZU9_008 not in the Motif Atlas
Homologous match to IL_4V88_391
Geometric discrepancy: 0.1271
The information below is about IL_4V88_391
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

6ZU9|1|2|G|109
6ZU9|1|2|U|110
6ZU9|1|2|U|111
6ZU9|1|2|A|112
*
6ZU9|1|2|U|302
6ZU9|1|2|U|303
6ZU9|1|2|U|304
6ZU9|1|2|C|305

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain S
40S ribosomal protein S4-A
Chain V
40S ribosomal protein S8-A
Chain X
40S ribosomal protein S11-A

Coloring options:


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