IL_6ZU9_011

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

UAUAAC*GCUAAUA

Length

13 nucleotides

Bulged bases

6ZU9|1|2|U|170

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU9_011 not in the Motif Atlas

Geometric match to IL_4LFB_009

Geometric discrepancy: 0.2298

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6ZU9|1|2|U|144
6ZU9|1|2|A|145
6ZU9|1|2|U|146
6ZU9|1|2|A|147
6ZU9|1|2|A|148
6ZU9|1|2|C|149
*
6ZU9|1|2|G|165
6ZU9|1|2|C|166
6ZU9|1|2|U|167
6ZU9|1|2|A|168
6ZU9|1|2|A|169
6ZU9|1|2|U|170
6ZU9|1|2|A|171

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S6-A

Chain d

40S ribosomal protein S24-A