IL_6ZU9_066
3D structure
- PDB id
- 6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast ABCE1-bound 48S initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- GUGCAU*AUGC
- Length
- 10 nucleotides
- Bulged bases
- 6ZU9|1|2|C|1274
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZU9_066 not in the Motif Atlas
- Geometric match to IL_4V88_473
- Geometric discrepancy: 0.2897
- The information below is about IL_4V88_473
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6ZU9|1|2|G|1271
6ZU9|1|2|U|1272
6ZU9|1|2|G|1273
6ZU9|1|2|C|1274
6ZU9|1|2|A|1275
6ZU9|1|2|U|1276
*
6ZU9|1|2|A|1436
6ZU9|1|2|U|1437
6ZU9|1|2|G|1438
6ZU9|1|2|C|1439
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- Eukaryotic translation initiation factor 1A
- Chain B
- 40S ribosomal protein S3
- Chain D
- 40S ribosomal protein S10-A
- Chain N
- 40S ribosomal protein S29-A
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