IL_6ZU9_093

3D structure

PDB id

6ZU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 48S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

6ZU9|1|2|U|959

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU9_093 not in the Motif Atlas

Homologous match to IL_8P9A_418

Geometric discrepancy: 0.4163

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6ZU9|1|2|G|867
6ZU9|1|2|G|868
6ZU9|1|2|A|869
*
6ZU9|1|2|U|958
6ZU9|1|2|U|959
6ZU9|1|2|U|960
6ZU9|1|2|U|961

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Y

40S ribosomal protein S13

Chain f

40S ribosomal protein S27-A