IL_6ZUO_017

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

6ZUO|1|2|U|305, 6ZUO|1|2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZUO_017 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3662

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6ZUO|1|2|C|216
6ZUO|1|2|A|217
6ZUO|1|2|U|218
6ZUO|1|2|U|219
*
6ZUO|1|2|A|302
6ZUO|1|2|C|303
6ZUO|1|2|C|304
6ZUO|1|2|U|305
6ZUO|1|2|C|306
6ZUO|1|2|G|307
6ZUO|1|2|G|308
6ZUO|1|2|G|309

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain I

40S ribosomal protein S8