IL_6ZUO_035

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6ZUO|1|2|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZUO_035 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.1538

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6ZUO|1|2|G|611
6ZUO|1|2|U|612
6ZUO|1|2|G|613
6ZUO|1|2|C|614
6ZUO|1|2|C|615
6ZUO|1|2|A|616
6ZUO|1|2|G|617
*
6ZUO|1|2|C|624
6ZUO|1|2|G|625
6ZUO|1|2|G|626
6ZUO|1|2|U|627
6ZUO|1|2|A|628
6ZUO|1|2|A|629
6ZUO|1|2|U|630
6ZUO|1|2|U|631
6ZUO|1|2|C|632

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30