IL_6ZUO_073
3D structure
- PDB id
- 6ZUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 6ZUO|1|2|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZUO_073 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.3294
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 29
Unit IDs
6ZUO|1|2|C|1395
6ZUO|1|2|A|1396
6ZUO|1|2|U|1397
6ZUO|1|2|G|1398
6ZUO|1|2|C|1399
*
6ZUO|1|2|G|1447
6ZUO|1|2|A|1448
6ZUO|1|2|G|1449
6ZUO|1|2|G|1450
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain Q
- 40S ribosomal protein S16
- Chain R
- 40S ribosomal protein S17
- Chain U
- 40S ribosomal protein S20
- Chain g
- Receptor of activated protein C kinase 1
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