IL_6ZV6_035

3D structure

PDB id

6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6ZV6|1|2|A|628, 6ZV6|1|2|U|630, 6ZV6|1|2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZV6_035 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1068

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6ZV6|1|2|G|611
6ZV6|1|2|U|612
6ZV6|1|2|G|613
6ZV6|1|2|C|614
6ZV6|1|2|C|615
6ZV6|1|2|A|616
6ZV6|1|2|G|617
*
6ZV6|1|2|C|624
6ZV6|1|2|G|625
6ZV6|1|2|G|626
6ZV6|1|2|U|627
6ZV6|1|2|A|628
6ZV6|1|2|A|629
6ZV6|1|2|U|630
6ZV6|1|2|U|631
6ZV6|1|2|C|632

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30