IL_6ZV6_047

3D structure

PDB id

6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6ZV6|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZV6_047 not in the Motif Atlas

Geometric match to IL_364D_004

Geometric discrepancy: 0.2932

The information below is about IL_364D_004

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6ZV6|1|2|G|925
6ZV6|1|2|A|926
6ZV6|1|2|C|927
*
6ZV6|1|2|G|1014
6ZV6|1|2|U|1015
6ZV6|1|2|U|1016
6ZV6|1|2|U|1017

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

40S ribosomal protein S13

Chain W

40S ribosomal protein S15a

Chain b

40S ribosomal protein S27