IL_6ZV6_049

3D structure

PDB id

6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

6ZV6|1|2|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZV6_049 not in the Motif Atlas

Homologous match to IL_4V88_431

Geometric discrepancy: 0.0986

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6ZV6|1|2|C|931
6ZV6|1|2|G|932
6ZV6|1|2|G|933
6ZV6|1|2|G|934
6ZV6|1|2|G|935
*
6ZV6|1|2|C|1007
6ZV6|1|2|A|1008
6ZV6|1|2|A|1009
6ZV6|1|2|G|1010

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain N

40S ribosomal protein S13

Chain a

40S ribosomal protein S26