IL_6ZV6_061

3D structure

PDB id

6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

6ZV6|1|2|C|1215, 6ZV6|1|2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZV6_061 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.1195

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

6ZV6|1|2|A|1214
6ZV6|1|2|C|1215
6ZV6|1|2|C|1216
6ZV6|1|2|A|1217
*
6ZV6|1|2|U|1681
6ZV6|1|2|C|1682
6ZV6|1|2|C|1683
6ZV6|1|2|C|1684
6ZV6|1|2|U|1685

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16

Chain c

40S ribosomal protein S28