IL_6ZVH_021

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

6ZVH|1|2|U|361, 6ZVH|1|2|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVH_021 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1003

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6ZVH|1|2|U|359
6ZVH|1|2|A|360
6ZVH|1|2|U|361
6ZVH|1|2|C|362
6ZVH|1|2|A|363
6ZVH|1|2|A|364
*
6ZVH|1|2|U|396
6ZVH|1|2|G|397
6ZVH|1|2|A|398
6ZVH|1|2|C|399
6ZVH|1|2|C|400
6ZVH|1|2|A|401
6ZVH|1|2|C|402
6ZVH|1|2|G|403

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

40S ribosomal protein S11

Chain X

40S ribosomal protein S23