IL_6ZVH_096
3D structure
- PDB id
- 6ZVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EDF1-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 6ZVH|1|2|C|1331, 6ZVH|1|2|U|1494, 6ZVH|1|2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVH_096 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.0855
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.2
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6ZVH|1|2|U|1329
6ZVH|1|2|G|1330
6ZVH|1|2|C|1331
6ZVH|1|2|A|1332
6ZVH|1|2|U|1333
6ZVH|1|2|G|1334
6ZVH|1|2|G|1335
*
6ZVH|1|2|U|1492
6ZVH|1|2|C|1493
6ZVH|1|2|U|1494
6ZVH|1|2|G|1495
6ZVH|1|2|U|1496
6ZVH|1|2|G|1497
6ZVH|1|2|A|1498
6ZVH|1|2|U|1499
6ZVH|1|2|G|1500
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain K
- 40S ribosomal protein S10
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29
- Chain i
- Endothelial differentiation-related factor 1
- Chain y
- Cell growth-regulating nucleolar protein
Coloring options: